本文整理汇总了Java中beast.core.util.CompoundDistribution类的典型用法代码示例。如果您正苦于以下问题：Java CompoundDistribution类的具体用法？Java CompoundDistribution怎么用？Java CompoundDistribution使用的例子？那么恭喜您, 这里精选的类代码示例或许可以为您提供帮助。
CompoundDistribution类属于beast.core.util包，在下文中一共展示了CompoundDistribution类的9个代码示例，这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞，您的评价将有助于我们的系统推荐出更棒的Java代码示例。
示例1: addTraitSet
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import beast.core.util.CompoundDistribution; //导入依赖的package包/类
/**
* assigns trait to first available tree *
*/
void addTraitSet(TraitSet trait) {
if (trait != null) {
CompoundDistribution likelihood = (CompoundDistribution) pluginmap.get("likelihood");
for (Distribution d : likelihood.pDistributions.get()) {
if (d instanceof GenericTreeLikelihood) {
try {
// TODO: this might not be a valid type conversion from TreeInterface to Tree
Tree tree = (Tree) ((GenericTreeLikelihood) d).treeInput.get();
tree.m_traitList.setValue(trait, tree);
} catch (Exception e) {
e.printStackTrace();
}
scrubAll(true, false);
return;
}
}
}
}
开发者ID:CompEvol，
项目名称:beast2，
代码行数:22，
代码来源:BeautiDoc.java
示例2: assertParameterCountInPriorIs
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import beast.core.util.CompoundDistribution; //导入依赖的package包/类
void assertParameterCountInPriorIs(int i) {
// count nr of parameters in Prior objects in prior
// including those for prior distributions (Normal, etc)
// useful to make sure they do (or do not) get linked
Set<Function> parameters = new LinkedHashSet<>();
CompoundDistribution prior = (CompoundDistribution) doc.pluginmap.get("prior");
for (Distribution p : prior.pDistributions.get()) {
if (p instanceof Prior) {
Prior p2 = (Prior) p;
parameters.add(p2.m_x.get());
for (BEASTInterface o : p2.distInput.get().listActiveBEASTObjects()) {
if (o instanceof Parameter) {
parameters.add((Parameter<?>) o);
}
}
}
}
System.err.println("Number of parameters in prior = " + parameters.size());
if (i >= 0) {
assertThat(parameters.size()).as("Expected " + i + " parameters in prior").isEqualTo(i);
}
}
开发者ID:CompEvol，
项目名称:beast2，
代码行数:23，
代码来源:BeautiBase.java
示例3: NS
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import beast.core.util.CompoundDistribution; //导入依赖的package包/类
public NS(int chainLength, int preBurnin, int particleCount, int subChainLength, State state, List<Operator> operators, CompoundDistribution distribution, Double epsilon) {
initByName("chainLength", chainLength,
"preBurnin", preBurnin,
"particleCount", particleCount,
"subChainLength", subChainLength,
"state", state,
"operator", operators,
"distribution", distribution,
"epsilon", epsilon);
}
开发者ID:BEAST2-Dev，
项目名称:nested-sampling，
代码行数:11，
代码来源:NS.java
示例4: customConnector
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import beast.core.util.CompoundDistribution; //导入依赖的package包/类
public static void customConnector(BeautiDoc doc) {
Object o0 = doc.pluginmap.get("prior");
if (o0 != null && o0 instanceof CompoundDistribution) {
CompoundDistribution p = (CompoundDistribution) o0;
for (Distribution p0 : p.pDistributions.get()) {
if (p0 instanceof MRCAPrior) {
MRCAPrior prior = (MRCAPrior) p0;
if (prior.treeInput.get() != null) {
boolean isInState = false;
for (BEASTInterface o : prior.treeInput.get().getOutputs()) {
if (o instanceof State) {
isInState = true;
break;
}
}
if (!isInState) {
doc.disconnect(prior, "prior", "distribution");
doc.disconnect(prior, "tracelog", "log");
if (prior.onlyUseTipsInput.get()) {
disableTipSampling(prior, doc);
}
doc.unregisterPlugin(prior);
return;
}
}
}
}
}
}
开发者ID:CompEvol，
项目名称:beast2，
代码行数:31，
代码来源:MRCAPriorInputEditor.java
示例5: reportLogLikelihoods
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import beast.core.util.CompoundDistribution; //导入依赖的package包/类
protected void reportLogLikelihoods(final Distribution distr, final String tabString) {
final double full = distr.logP, last = distr.storedLogP;
final String changed = full == last ? "" : " **";
Log.info.println(tabString + "P(" + distr.getID() + ") = " + full + " (was " + last + ")" + changed);
if (distr instanceof CompoundDistribution) {
for (final Distribution distr2 : ((CompoundDistribution) distr).pDistributions.get()) {
reportLogLikelihoods(distr2, tabString + "\t");
}
}
}
开发者ID:CompEvol，
项目名称:beast2，
代码行数:11，
代码来源:MCMC.java
示例6: collectTargetDensities
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import beast.core.util.CompoundDistribution; //导入依赖的package包/类
protected void collectTargetDensities(final Distribution distr, List<Double> densities) {
densities.add(distr.getCurrentLogP());
if (distr instanceof CompoundDistribution) {
for (final Distribution childDistr : ((CompoundDistribution) distr).pDistributions.get()) {
collectTargetDensities(childDistr, densities);
}
}
}
开发者ID:tgvaughan，
项目名称:bacter，
代码行数:9，
代码来源:MCMCTrace.java
示例7: collectTargetDensityNames
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import beast.core.util.CompoundDistribution; //导入依赖的package包/类
protected void collectTargetDensityNames(final Distribution distr, List<String> densityNames) {
densityNames.add(distr.getID());
if (distr instanceof CompoundDistribution) {
for (final Distribution childDistr : ((CompoundDistribution) distr).pDistributions.get()) {
collectTargetDensityNames(childDistr, densityNames);
}
}
}
开发者ID:tgvaughan，
项目名称:bacter，
代码行数:9，
代码来源:MCMCTrace.java
示例8: reportTargetDensities
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import beast.core.util.CompoundDistribution; //导入依赖的package包/类
protected static void reportTargetDensities(final Distribution distr) {
System.out.println(distr.getID() + ": " + distr.getCurrentLogP());
if (distr instanceof CompoundDistribution) {
for (final Distribution childDistr : ((CompoundDistribution) distr).pDistributions.get()) {
reportTargetDensities(childDistr);
}
}
}
开发者ID:tgvaughan，
项目名称:bacter，
代码行数:9，
代码来源:DensityCalculator.java
示例9: priorsAsString
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import beast.core.util.CompoundDistribution; //导入依赖的package包/类
String priorsAsString() {
CompoundDistribution prior = (CompoundDistribution) doc.pluginmap.get("prior");
List<Distribution> priors = prior.pDistributions.get();
return "assertPriorsEqual" + pluginListAsString(priors);
}
开发者ID:CompEvol，
项目名称:beast2，
代码行数:6，
代码来源:BeautiBase.java
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